Update seqsero2: topic versions, stub block, sanitizeOutput#11446
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HReed1 wants to merge 3 commits intonf-core:masterfrom
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Update seqsero2: topic versions, stub block, sanitizeOutput#11446HReed1 wants to merge 3 commits intonf-core:masterfrom
HReed1 wants to merge 3 commits intonf-core:masterfrom
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SPPearce
requested changes
May 1, 2026
| process.out.versions | ||
| ).match() | ||
| } | ||
| { assert snapshot(sanitizeOutput(process.out)).match() } |
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Can't just blindly use sanitizeOutput on process.out when we weren't before!
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- main.nf: emit: versions -> emit: versions_seqsero2 - meta.yml: output key versions: -> versions_seqsero2: - tests/main.nf.test.snap: regenerate snapshots Local lint: 52/0. Local nf-test: 2/2 passed.
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PR checklist
--profile docker,wavetests.nf-core modules lint).nf-test test).Description of changes
Migrates the seqsero2 module to the nf-core v4.0.1 architecture:
versions.ymlfile emission with dynamiceval()tuple emission on thetopic: versionschannel.stub:block for CI/CD stub-run support.sanitizeOutput(process.out)per nf-test best practices.output: versions_seqsero2andtopics: versionssections.Part of the v4.0.1 standardization effort tracked in #11323.