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1. basicTemplate basicTemplate Public

   Basic R markdown template

   R 1

2. basicRstudioTemplate basicRstudioTemplate Public

   An Rstudio Template for bioinformatics

   R

3. sunbeam-labs/sbx_vsearch sunbeam-labs/sbx_vsearch Public

   Sunbeam extension for Vsearch (https://github.com/torognes/vsearch)

   Python 1

4. 16S_QIIME2 16S_QIIME2 Public

   Forked from junglee0713/16S_QIIME2

   Snakemake based 16S QIIME2 pipeline

   Python

5. SGD_gutmicro_2026 SGD_gutmicro_2026 Public

   Data and code for the paper: "Gut Microbiota in Preterm infants with different weight gain outcomes"

   R

6. Southwood_2025 Southwood_2025 Public

   Data files and R code for the paper: "Effect of surgical antimicrobial prophylaxis duration for colic surgery on complications and resistome"

   R